IL_4IOA_062

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29978.2

Basepair signature

cWW-L-L-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4IOA|1|X|G|1668
4IOA|1|X|A|1669
4IOA|1|X|G|1670
4IOA|1|X|A|1671
4IOA|1|X|A|1672
4IOA|1|X|C|1673
*
4IOA|1|X|G|1987
4IOA|1|X|A|1988
4IOA|1|X|C|1989

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain K

50S ribosomal protein L17