IL_4IOA_065

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

4IOA|1|X|C|1792, 4IOA|1|X|C|1808, 4IOA|1|X|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17069.1

Basepair signature

cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4IOA|1|X|U|1789
4IOA|1|X|G|1790
4IOA|1|X|C|1791
4IOA|1|X|C|1792
4IOA|1|X|A|1793
4IOA|1|X|A|1794
4IOA|1|X|C|1795
*
4IOA|1|X|G|1805
4IOA|1|X|G|1806
4IOA|1|X|A|1807
4IOA|1|X|C|1808
4IOA|1|X|G|1809
4IOA|1|X|U|1810
4IOA|1|X|A|1811
4IOA|1|X|U|1812
4IOA|1|X|A|1813

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2