IL_4IOA_072

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4IOA|1|X|A|1921, 4IOA|1|X|U|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68913.1

Basepair signature

cWW-L-R-R-L-L-L-cSH-L-L-cWW

Number of instances in this motif group

1

Unit IDs

4IOA|1|X|C|1917
4IOA|1|X|G|1918
4IOA|1|X|A|1919
4IOA|1|X|A|1920
4IOA|1|X|A|1921
4IOA|1|X|U|1922
4IOA|1|X|U|1923
4IOA|1|X|C|1924
4IOA|1|X|C|1925
4IOA|1|X|U|1926
4IOA|1|X|U|1927
4IOA|1|X|G|1928
*
4IOA|1|X|C|1944
4IOA|1|X|C|1945
4IOA|1|X|U|1946
4IOA|1|X|G|1947

Current chains

Chain X

23S ribosomal RNA

Nearby chains