3D structure

PDB id
4IOA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGAG*CGAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.5
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
28

Unit IDs

4IOA|1|X|C|2329
4IOA|1|X|G|2330
4IOA|1|X|A|2331
4IOA|1|X|G|2332
*
4IOA|1|X|C|2343
4IOA|1|X|G|2344
4IOA|1|X|A|2345
4IOA|1|X|G|2346

Current chains

Chain X
23S ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L35
Chain T
50S ribosomal protein L27

Coloring options:

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