IL_4IOA_095

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4IOA|1|X|G|2760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_35167.3

Basepair signature

cWW-R-tWH-L-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4IOA|1|X|U|2615
4IOA|1|X|U|2616
4IOA|1|X|G|2617
4IOA|1|X|A|2618
4IOA|1|X|G|2619
*
4IOA|1|X|C|2754
4IOA|1|X|A|2755
4IOA|1|X|A|2756
4IOA|1|X|G|2757
4IOA|1|X|A|2758
4IOA|1|X|U|2759
4IOA|1|X|G|2760
4IOA|1|X|A|2761
4IOA|1|X|G|2762

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13