IL_4IOA_096

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_35110.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4IOA|1|X|C|2631
4IOA|1|X|U|2632
4IOA|1|X|A|2633
4IOA|1|X|G|2634
4IOA|1|X|U|2635
4IOA|1|X|A|2636
4IOA|1|X|C|2637
*
4IOA|1|X|G|2642
4IOA|1|X|G|2643
4IOA|1|X|A|2644
4IOA|1|X|C|2645
4IOA|1|X|C|2646
4IOA|1|X|G|2647

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain H

50S ribosomal protein L14