IL_4IOA_097

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCGCU*AUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.1

Basepair signature

cWW-tWH-cSH-L-cWS-cWW

Number of instances in this motif group

22

Unit IDs

4IOA|1|X|C|2659
4IOA|1|X|C|2660
4IOA|1|X|G|2661
4IOA|1|X|C|2662
4IOA|1|X|U|2663
*
4IOA|1|X|A|2705
4IOA|1|X|U|2706
4IOA|1|X|G|2707

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14

Chain K

50S ribosomal protein L17

Chain M

50S ribosomal protein L19