IL_4J5V_014

3D structure

PDB id

4J5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of p19 in complex with double-helical RNA 19mer p(CAG)3C(CCG)3

Experimental method

X-RAY DIFFRACTION

Resolution

2.15 Å

Loop

Sequence

CCG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4J5V_014 not in the Motif Atlas

Geometric match to IL_7QQP_008

Geometric discrepancy: 0.1097

The information below is about IL_7QQP_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

4J5V|1|B|C|217
4J5V|1|B|C|218
4J5V|1|B|G|219
*
4J5V|1|B|C|201||A||4_555
4J5V|1|B|A|202||||4_555
4J5V|1|B|G|203||||4_555

Current chains

Chain B

5'-R(P*CP*AP*GP*CP*AP*GP*CP*AP*GP*CP*CP*CP*GP*CP*CP*GP*CP*CP*G)-3'

Nearby chains

Chain A

RNA silencing suppressor p19