IL_4JI1_048

3D structure

PDB id

4JI1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

UAG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UAG,CUA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI1_048 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.3635

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4JI1|1|A|U|1122
4JI1|1|A|A|1123
4JI1|1|A|G|1124
*
4JI1|1|A|C|1149
4JI1|1|A|U|1150
4JI1|1|A|A|1151

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

RIBOSOMAL PROTEIN S9

Chain J

RIBOSOMAL PROTEIN S10