IL_4JI2_020

3D structure

PDB id

4JI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI2_020 not in the Motif Atlas

Homologous match to IL_6CZR_359

Geometric discrepancy: 0.2006

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4JI2|1|A|G|409
4JI2|1|A|G|410
4JI2|1|A|A|411
4JI2|1|A|A|412
4JI2|1|A|G|413
4JI2|1|A|A|414
4JI2|1|A|A|415
4JI2|1|A|G|416
*
4JI2|1|A|U|427
4JI2|1|A|G|428
4JI2|1|A|U|429
4JI2|1|A|A|430
4JI2|1|A|A|431
4JI2|1|A|A|432
4JI2|1|A|C|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN S4