IL_4JI2_022

3D structure

PDB id

4JI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI2_022 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.0772

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4JI2|1|A|C|504
4JI2|1|A|G|505
4JI2|1|A|G|506
4JI2|1|A|C|507
4JI2|1|A|C|508
4JI2|1|A|A|509
4JI2|1|A|A|510
4JI2|1|A|C|511
*
4JI2|1|A|G|540
4JI2|1|A|G|541

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN S4

Chain E

RIBOSOMAL PROTEIN S5

Chain L

RIBOSOMAL PROTEIN S12