IL_4JI2_048

3D structure

PDB id

4JI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

UGG*UCAGCA

Length

9 nucleotides

Bulged bases

4JI2|1|A|C|1200, 4JI2|1|A|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI2_048 not in the Motif Atlas

Geometric match to IL_7RQB_031

Geometric discrepancy: 0.3678

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

4JI2|1|A|U|1056
4JI2|1|A|G|1057
4JI2|1|A|G|1058
*
4JI2|1|A|U|1199
4JI2|1|A|C|1200
4JI2|1|A|A|1201
4JI2|1|A|G|1202
4JI2|1|A|C|1203
4JI2|1|A|A|1204

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN S3

Chain J

RIBOSOMAL PROTEIN S10

Chain N

RIBOSOMAL PROTEIN S14