IL_4JI2_071

3D structure

PDB id

4JI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GGCG*CGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI2_071 not in the Motif Atlas

Homologous match to IL_6CZR_136

Geometric discrepancy: 0.1816

The information below is about IL_6CZR_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05564.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

4JI2|1|A|G|594
4JI2|1|A|G|595
4JI2|1|A|C|596
4JI2|1|A|G|597
*
4JI2|1|A|C|643
4JI2|1|A|G|644
4JI2|1|A|C|645

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

RIBOSOMAL PROTEIN S8

Chain Q

RIBOSOMAL PROTEIN S17