IL_4JI2_077
3D structure
- PDB id
- 4JI2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- CGUC*GUCUG
- Length
- 9 nucleotides
- Bulged bases
- 4JI2|1|A|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4JI2_077 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.2668
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
4JI2|1|A|C|1060
4JI2|1|A|G|1061
4JI2|1|A|U|1062
4JI2|1|A|C|1063
*
4JI2|1|A|G|1193
4JI2|1|A|U|1194
4JI2|1|A|C|1195
4JI2|1|A|U|1196
4JI2|1|A|G|1197
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- RIBOSOMAL PROTEIN S3
- Chain E
- RIBOSOMAL PROTEIN S5
- Chain I
- RIBOSOMAL PROTEIN S9
- Chain J
- RIBOSOMAL PROTEIN S10
- Chain N
- RIBOSOMAL PROTEIN S14
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