IL_4JI4_046

3D structure

PDB id

4JI4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

GGGU*GCCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI4_046 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.3796

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4JI4|1|A|G|1009
4JI4|1|A|G|1010
4JI4|1|A|G|1011
4JI4|1|A|U|1012
*
4JI4|1|A|G|1017
4JI4|1|A|C|1018
4JI4|1|A|C|1019
4JI4|1|A|U|1020

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

RIBOSOMAL PROTEIN S14

Chain S

RIBOSOMAL PROTEIN S19