IL_4JI5_012

3D structure

PDB id

4JI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4JI5|1|A|U|244, 4JI5|1|A|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI5_012 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.1073

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

4JI5|1|A|C|242
4JI5|1|A|A|243
4JI5|1|A|U|244
4JI5|1|A|C|245
4JI5|1|A|A|246
4JI5|1|A|G|247
*
4JI5|1|A|C|277
4JI5|1|A|G|278
4JI5|1|A|A|279
4JI5|1|A|C|280
4JI5|1|A|G|281
4JI5|1|A|A|282
4JI5|1|A|C|283
4JI5|1|A|G|284

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

RIBOSOMAL PROTEIN S12

Chain Q

RIBOSOMAL PROTEIN S17