IL_4JI5_041

3D structure

PDB id

4JI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

GCA*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCA,UGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI5_041 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.1604

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

4JI5|1|A|G|947
4JI5|1|A|C|948
4JI5|1|A|A|949
*
4JI5|1|A|U|1232
4JI5|1|A|G|1233
4JI5|1|A|C|1234

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

RIBOSOMAL PROTEIN S9

Chain M

RIBOSOMAL PROTEIN S13

Chain U

RIBOSOMAL PROTEIN THX