IL_4JI5_062
3D structure
- PDB id
- 4JI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.85 Å
Loop
- Sequence
- GU(5MC)ACG*CGAAGUC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4JI5_062 not in the Motif Atlas
- Geometric match to IL_6CZR_369
- Geometric discrepancy: 0.3937
- The information below is about IL_6CZR_369
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71294.1
- Basepair signature
- cWW-cWW-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4JI5|1|A|G|1405
4JI5|1|A|U|1406
4JI5|1|A|5MC|1407
4JI5|1|A|A|1408
4JI5|1|A|C|1409
4JI5|1|A|G|1410
*
4JI5|1|A|C|1490
4JI5|1|A|G|1491
4JI5|1|A|A|1492
4JI5|1|A|A|1493
4JI5|1|A|G|1494
4JI5|1|A|U|1495
4JI5|1|A|C|1496
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- RIBOSOMAL PROTEIN S12
Coloring options: