IL_4JI5_068

3D structure

PDB id

4JI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

4JI5|1|A|G|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI5_068 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.1444

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34117.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

4JI5|1|A|C|1440
4JI5|1|A|G|1441
4JI5|1|A|G|1442
4JI5|1|A|G|1443
4JI5|1|A|A|1446
4JI5|1|A|G|1447
*
4JI5|1|A|C|1459
4JI5|1|A|A|1460
4JI5|1|A|G|1461

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

RIBOSOMAL PROTEIN S20