IL_4JI6_013

3D structure

PDB id

4JI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GG*UGGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI6_013 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.0974

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

4JI6|1|A|G|292
4JI6|1|A|G|293
*
4JI6|1|A|U|304
4JI6|1|A|G|305
4JI6|1|A|G|306
4JI6|1|A|C|307
4JI6|1|A|C|308

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

RIBOSOMAL PROTEIN S12

Chain P

RIBOSOMAL PROTEIN S16