IL_4JI6_022

3D structure

PDB id

4JI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

4JI6|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI6_022 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1013

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

4JI6|1|A|C|569
4JI6|1|A|G|570
4JI6|1|A|U|571
4JI6|1|A|A|572
4JI6|1|A|A|573
4JI6|1|A|A|574
4JI6|1|A|G|575
*
4JI6|1|A|C|880
4JI6|1|A|G|881

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN S5

Chain L

RIBOSOMAL PROTEIN S12

Chain Q

RIBOSOMAL PROTEIN S17