IL_4JI7_040

3D structure

PDB id

4JI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGC*GCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGC,GCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI7_040 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1981

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4JI7|1|A|U|997
4JI7|1|A|G|998
4JI7|1|A|C|999
*
4JI7|1|A|G|1042
4JI7|1|A|C|1043
4JI7|1|A|A|1044

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

RIBOSOMAL PROTEIN S14