IL_4JI8_025
3D structure
- PDB id
- 4JI8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- UGAAAGAC*GGGGAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4JI8_025 not in the Motif Atlas
- Homologous match to IL_4LFB_026
- Geometric discrepancy: 0.1069
- The information below is about IL_4LFB_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04211.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
4JI8|1|A|U|605
4JI8|1|A|G|606
4JI8|1|A|A|607
4JI8|1|A|A|608
4JI8|1|A|A|609
4JI8|1|A|G|610
4JI8|1|A|A|611
4JI8|1|A|C|612
*
4JI8|1|A|G|628
4JI8|1|A|G|629
4JI8|1|A|G|630
4JI8|1|A|G|631
4JI8|1|A|A|632
4JI8|1|A|G|633
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- RIBOSOMAL PROTEIN S4
- Chain H
- RIBOSOMAL PROTEIN S8
- Chain P
- RIBOSOMAL PROTEIN S16
Coloring options: