IL_4JI8_033
3D structure
- PDB id
- 4JI8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- GGAGUACG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4JI8_033 not in the Motif Atlas
- Homologous match to IL_4LFB_034
- Geometric discrepancy: 0.0818
- The information below is about IL_4LFB_034
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
4JI8|1|A|G|887
4JI8|1|A|G|888
4JI8|1|A|A|889
4JI8|1|A|G|890
4JI8|1|A|U|891
4JI8|1|A|A|892
4JI8|1|A|C|893
4JI8|1|A|G|894
*
4JI8|1|A|U|905
4JI8|1|A|G|906
4JI8|1|A|A|907
4JI8|1|A|A|908
4JI8|1|A|A|909
4JI8|1|A|C|910
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- RIBOSOMAL PROTEIN S12
- Chain Q
- RIBOSOMAL PROTEIN S17
Coloring options: