IL_4JRC_004

3D structure

PDB id

4JRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Distal Stem I region from G. kaustophilus glyQS T box RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.67 Å

Loop

Sequence

CCGAAGCGAG*UG

Length

12 nucleotides

Bulged bases

4JRC|1|B|C|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64048.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R

Number of instances in this motif group

2

Unit IDs

4JRC|1|B|C|37
4JRC|1|B|C|38
4JRC|1|B|G|39
4JRC|1|B|A|40
4JRC|1|B|A|41
4JRC|1|B|G|42
4JRC|1|B|C|43
4JRC|1|B|G|44
4JRC|1|B|A|45
4JRC|1|B|G|46
*
4JRC|1|B|U|68
4JRC|1|B|G|69

Current chains

Chain B

Distal Stem I region of the glyQS T box leader RNA

Nearby chains

Chain A

Distal Stem I region of the glyQS T box leader RNA