3D structure

PDB id
4JV5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structures of pseudouridinilated stop codons with ASLs
Experimental method
X-RAY DIFFRACTION
Resolution
3.16 Å

Loop

Sequence
GAAACC*GACUGAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4JV5_020 not in the Motif Atlas
Geometric match to IL_4LFB_019
Geometric discrepancy: 0.0806
The information below is about IL_4LFB_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31561.1
Basepair signature
cWW-L-R-tWH-tWH-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

4JV5|1|A|G|450
4JV5|1|A|A|451
4JV5|1|A|A|452
4JV5|1|A|A|453
4JV5|1|A|C|454
4JV5|1|A|C|455
*
4JV5|1|A|G|476
4JV5|1|A|A|477
4JV5|1|A|C|479
4JV5|1|A|U|480
4JV5|1|A|G|481
4JV5|1|A|A|482
4JV5|1|A|C|483

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain P
30S ribosomal protein S16

Coloring options:


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