3D structure

PDB id
4JV5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structures of pseudouridinilated stop codons with ASLs
Experimental method
X-RAY DIFFRACTION
Resolution
3.16 Å

Loop

Sequence
GGAGUACG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4JV5_035 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.0577
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

4JV5|1|A|G|887
4JV5|1|A|G|888
4JV5|1|A|A|889
4JV5|1|A|G|890
4JV5|1|A|U|891
4JV5|1|A|A|892
4JV5|1|A|C|893
4JV5|1|A|G|894
*
4JV5|1|A|U|905
4JV5|1|A|G|906
4JV5|1|A|A|907
4JV5|1|A|A|908
4JV5|1|A|A|909
4JV5|1|A|C|910

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain L
30S ribosomal protein S12
Chain Q
30S ribosomal protein S17

Coloring options:


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