IL_4JV5_038

3D structure

PDB id

4JV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structures of pseudouridinilated stop codons with ASLs

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

4JV5|1|A|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JV5_038 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.0845

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4JV5|1|A|G|933
4JV5|1|A|C|934
4JV5|1|A|A|935
*
4JV5|1|A|U|1380
4JV5|1|A|U|1381
4JV5|1|A|C|1382
4JV5|1|A|C|1383
4JV5|1|A|C|1384

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9