IL_4JV5_060

3D structure

PDB id

4JV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structures of pseudouridinilated stop codons with ASLs

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JV5_060 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.1913

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4JV5|1|A|C|1407
4JV5|1|A|A|1408
4JV5|1|A|C|1409
*
4JV5|1|A|G|1491
4JV5|1|A|A|1492
4JV5|1|A|A|1493
4JV5|1|A|G|1494

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain X

mRNA

Chain Y

ASL-tRNA