IL_4JYA_020

3D structure

PDB id

4JYA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structures of pseudouridinilated stop codons with ASLs

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JYA_020 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.0654

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4JYA|1|A|G|445
4JYA|1|A|A|446
4JYA|1|A|A|447
4JYA|1|A|A|448
4JYA|1|A|C|449
4JYA|1|A|C|450
*
4JYA|1|A|G|462
4JYA|1|A|A|463
4JYA|1|A|C|464
4JYA|1|A|U|465
4JYA|1|A|G|466
4JYA|1|A|A|467
4JYA|1|A|C|468

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16