IL_4K0K_056

3D structure

PDB id

4K0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit complexed with a serine-ASL and mRNA containing a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4K0K_056 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.0962

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4K0K|1|A|G|1384
4K0K|1|A|C|1385
4K0K|1|A|C|1386
4K0K|1|A|C|1387
*
4K0K|1|A|G|1475
4K0K|1|A|U|1476
4K0K|1|A|A|1477
4K0K|1|A|A|1478
4K0K|1|A|C|1479

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain X

mRNA