IL_4K0K_063

3D structure

PDB id

4K0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit complexed with a serine-ASL and mRNA containing a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

4K0K|1|A|G|1426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4K0K_063 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.238

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49061.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

4K0K|1|A|C|1423
4K0K|1|A|G|1424
4K0K|1|A|G|1425
4K0K|1|A|G|1426
4K0K|1|A|A|1427
4K0K|1|A|G|1428
*
4K0K|1|A|C|1437
4K0K|1|A|A|1438
4K0K|1|A|G|1439

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20