IL_4KHP_012
3D structure
- PDB id
- 4KHP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 4KHP|1|A|U|240, 4KHP|1|A|C|276
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4KHP_012 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.0693
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
4KHP|1|A|C|238
4KHP|1|A|A|239
4KHP|1|A|U|240
4KHP|1|A|C|241
4KHP|1|A|A|242
4KHP|1|A|G|243
*
4KHP|1|A|C|273
4KHP|1|A|G|274
4KHP|1|A|A|275
4KHP|1|A|C|276
4KHP|1|A|G|277
4KHP|1|A|A|278
4KHP|1|A|C|279
4KHP|1|A|G|280
Current chains
- Chain A
- 16S Ribosomal RNA
Nearby chains
- Chain L
- 30S Ribosomal protein S12
- Chain Q
- 30S Ribosomal protein S17
Coloring options: