IL_4KHP_020

3D structure

PDB id

4KHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KHP_020 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.0798

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4KHP|1|A|G|445
4KHP|1|A|A|446
4KHP|1|A|A|447
4KHP|1|A|A|448
4KHP|1|A|C|449
4KHP|1|A|C|450
*
4KHP|1|A|G|462
4KHP|1|A|A|463
4KHP|1|A|C|464
4KHP|1|A|U|465
4KHP|1|A|G|466
4KHP|1|A|A|467
4KHP|1|A|C|468

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain P

30S Ribosomal protein S16