IL_4KHP_033

3D structure

PDB id

4KHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KHP_033 not in the Motif Atlas

Homologous match to IL_5J7L_036

Geometric discrepancy: 0.0793

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

4KHP|1|A|G|758
4KHP|1|A|G|759
4KHP|1|A|G|760
4KHP|1|A|A|761
4KHP|1|A|G|762
*
4KHP|1|A|U|788
4KHP|1|A|C|789

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain K

30S Ribosomal protein S11