Motif IL_29346.2 Version IL_29346.2 of this group appears in releases 3.96 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3PDR_001 | 3PDR | 0.6815 | 1 | X | M-box riboswitch (ykoK leader) | C | 163 | G | 164 | A | 165 | U | 167 | G | 168 | * | C | 21 | G | 22 | cWW | cWW | |
| 2 | IL_5J7L_036 | 5J7L | 0.0000 | 0 | Left turn | AA | SSU rRNA | G | 774 | G | 775 | G | 776 | A | 777 | G | 778 | * | U | 804 | C | 805 | cWW | cWW |
| 3 | IL_4LFB_032 | 4LFB | 0.0778 | 0 | Left turn | A | SSU rRNA | G | 774 | G | 775 | G | 776 | A | 777 | G | 778 | * | U | 804 | C | 805 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGAG*UC | 2 |
| CGAUUG*CG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGA* | 2 |
| GAUU* | 1 |
Release history
| Release | 3.96 |
|---|---|
| Date | 2025-04-23 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Left turn (2)
- (1)
- Basepair signature
- cWW-L-cWW-L-L
- Heat map statistics
- Min 0.08 | Avg 0.32 | Max 0.70
Coloring options: