IL_4KHP_044

3D structure

PDB id

4KHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

4KHP|1|A|C|1037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KHP_044 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.1016

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

4KHP|1|A|U|1035
4KHP|1|A|G|1036
4KHP|1|A|C|1037
4KHP|1|A|A|1038
4KHP|1|A|U|1039
*
4KHP|1|A|A|1186
4KHP|1|A|U|1187
4KHP|1|A|G|1188

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain C

30S Ribosomal protein S3

Chain J

30S Ribosomal protein S10

Chain N

30S Ribosomal protein S14