IL_4KHP_053
3D structure
- PDB id
- 4KHP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGAUU*AUGAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4KHP_053 not in the Motif Atlas
- Geometric match to IL_4LFB_055
- Geometric discrepancy: 0.0884
- The information below is about IL_4LFB_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57885.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
4KHP|1|A|C|1285
4KHP|1|A|G|1286
4KHP|1|A|G|1287
4KHP|1|A|A|1288
4KHP|1|A|U|1289
4KHP|1|A|U|1290
*
4KHP|1|A|A|1311
4KHP|1|A|U|1312
4KHP|1|A|G|1313
4KHP|1|A|A|1314
4KHP|1|A|A|1315
4KHP|1|A|G|1316
Current chains
- Chain A
- 16S Ribosomal RNA
Nearby chains
- Chain M
- 30S Ribosomal protein S13
- Chain U
- 30S Ribosomal protein THX
Coloring options: