IL_4KHP_055

3D structure

PDB id

4KHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KHP_055 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.0952

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4KHP|1|A|G|1384
4KHP|1|A|C|1385
4KHP|1|A|C|1386
4KHP|1|A|C|1387
*
4KHP|1|A|G|1475
4KHP|1|A|U|1476
4KHP|1|A|A|1477
4KHP|1|A|A|1478
4KHP|1|A|C|1479

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain X

Fragment of messenger RNA