IL_4KHP_057

3D structure

PDB id

4KHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KHP_057 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.1812

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_29925.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

4KHP|1|A|C|1390
4KHP|1|A|A|1391
4KHP|1|A|C|1392
*
4KHP|1|A|G|1469
4KHP|1|A|A|1470
4KHP|1|A|A|1471
4KHP|1|A|G|1472

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain L

30S Ribosomal protein S12