IL_4KHP_062

3D structure

PDB id

4KHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

4KHP|1|A|G|1426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KHP_062 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.2158

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49061.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

4KHP|1|A|C|1423
4KHP|1|A|G|1424
4KHP|1|A|G|1425
4KHP|1|A|G|1426
4KHP|1|A|A|1427
4KHP|1|A|G|1428
*
4KHP|1|A|C|1437
4KHP|1|A|A|1438
4KHP|1|A|G|1439

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain T

30S Ribosomal protein S20