IL_4KHP_065

3D structure

PDB id

4KHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUGC*GGCACUC

Length

12 nucleotides

Bulged bases

4KHP|1|A|U|1108, 4KHP|1|A|U|1109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KHP_065 not in the Motif Atlas

Homologous match to IL_4LFB_048

Geometric discrepancy: 0.2633

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85222.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

4KHP|1|A|G|1107
4KHP|1|A|U|1108
4KHP|1|A|U|1109
4KHP|1|A|G|1110
4KHP|1|A|C|1111
*
4KHP|1|A|G|1126
4KHP|1|A|G|1127
4KHP|1|A|C|1128
4KHP|1|A|A|1129
4KHP|1|A|C|1130
4KHP|1|A|U|1131
4KHP|1|A|C|1132

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain I

30S Ribosomal protein S9

Chain J

30S Ribosomal protein S10