IL_4KQY_005

3D structure

PDB id

4KQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis yitJ S box/SAM-I riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.02 Å

Loop

Sequence

UGUAA*UGA

Length

8 nucleotides

Bulged bases

4KQY|1|A|U|54

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42314.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4KQY|1|A|U|52
4KQY|1|A|G|53
4KQY|1|A|U|54
4KQY|1|A|A|55
4KQY|1|A|A|56
*
4KQY|1|A|U|69
4KQY|1|A|G|70
4KQY|1|A|A|71

Current chains

Chain A

YitJ S box/SAM-I riboswitch

Nearby chains