IL_4KQY_006

3D structure

PDB id

4KQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis yitJ S box/SAM-I riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.02 Å

Loop

Sequence

UCCAGC*GGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Pseudoknot

Broad Annotation

Pseudoknot

Motif group

IL_69145.3

Basepair signature

cWW-L-cWW-L-R-L-R-R

Number of instances in this motif group

4

Unit IDs

4KQY|1|A|U|85
4KQY|1|A|C|86
4KQY|1|A|C|87
4KQY|1|A|A|88
4KQY|1|A|G|89
4KQY|1|A|C|90
*
4KQY|1|A|G|106
4KQY|1|A|G|107
4KQY|1|A|A|108
4KQY|1|A|A|109

Current chains

Chain A

YitJ S box/SAM-I riboswitch

Nearby chains