IL_4KQY_007

3D structure

PDB id

4KQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis yitJ S box/SAM-I riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.02 Å

Loop

Sequence

CAGAG*CGACGAAG

Length

13 nucleotides

Bulged bases

4KQY|1|A|C|34||||4_555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_29549.8

Basepair signature

cWW-tSH-tSH-tHS-tSS-R-cWW

Number of instances in this motif group

35

Unit IDs

4KQY|1|A|C|17||||4_555
4KQY|1|A|A|18||||4_555
4KQY|1|A|G|19||||4_555
4KQY|1|A|A|20||||4_555
4KQY|1|A|G|21||||4_555
*
4KQY|1|A|C|31||||4_555
4KQY|1|A|G|32||||4_555
4KQY|1|A|A|33||||4_555
4KQY|1|A|C|34||||4_555
4KQY|1|A|G|35||||4_555
4KQY|1|A|A|36||||4_555
4KQY|1|A|A|37||||4_555
4KQY|1|A|G|38||||4_555

Current chains

Chain A

YitJ S box/SAM-I riboswitch

Nearby chains