IL_4KVB_019

3D structure

PDB id

4KVB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17

Experimental method

X-RAY DIFFRACTION

Resolution

4.2 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KVB_019 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.0669

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4KVB|1|A|G|450
4KVB|1|A|A|451
4KVB|1|A|A|452
4KVB|1|A|A|453
4KVB|1|A|C|454
4KVB|1|A|C|455
*
4KVB|1|A|G|477
4KVB|1|A|A|478
4KVB|1|A|C|479
4KVB|1|A|U|480
4KVB|1|A|G|481
4KVB|1|A|A|482
4KVB|1|A|C|483

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16