IL_4KZD_007
3D structure
- PDB id
- 4KZD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of an RNA aptamer in complex with fluorophore and Fab
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.19 Å
Loop
- Sequence
- GAAGGACGGGU*AGUAGAGUGUGAGC
- Length
- 25 nucleotides
- Bulged bases
- 4KZD|1|R|A|24, 4KZD|1|R|A|56, 4KZD|1|R|U|60
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- G-quadruplex
- Broad Annotation
- No text annotation
- Motif group
- IL_64858.3
- Basepair signature
- cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
4KZD|1|R|G|19
4KZD|1|R|A|20
4KZD|1|R|A|21
4KZD|1|R|G|22
4KZD|1|R|G|23
4KZD|1|R|A|24
4KZD|1|R|C|25
4KZD|1|R|G|26
4KZD|1|R|G|27
4KZD|1|R|G|28
4KZD|1|R|U|29
*
4KZD|1|R|A|53
4KZD|1|R|G|54
4KZD|1|R|U|55
4KZD|1|R|A|56
4KZD|1|R|G|57
4KZD|1|R|A|58
4KZD|1|R|G|59
4KZD|1|R|U|60
4KZD|1|R|G|61
4KZD|1|R|U|62
4KZD|1|R|G|63
4KZD|1|R|A|64
4KZD|1|R|G|65
4KZD|1|R|C|66
Current chains
- Chain R
- RNA (84-MER)
Nearby chains
- Chain H
- BL3-6 Fab antibody, heavy chain
Coloring options: