IL_4KZX_014

3D structure

PDB id

4KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1.

Experimental method

X-RAY DIFFRACTION

Resolution

7.81 Å

Loop

Sequence

GCUGAC*GGAUGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZX_014 not in the Motif Atlas

Geometric match to IL_4N0T_001

Geometric discrepancy: 0.2972

The information below is about IL_4N0T_001

Detailed Annotation

Double sheared; A in syn; two near cWW pairs

Broad Annotation

Double sheared; A in syn; two near cWW pairs

Motif group

IL_82292.2

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4KZX|1|i|G|186
4KZX|1|i|C|187
4KZX|1|i|U|188
4KZX|1|i|G|189
4KZX|1|i|A|190
4KZX|1|i|C|191
*
4KZX|1|i|G|204
4KZX|1|i|G|205
4KZX|1|i|A|206
4KZX|1|i|U|207
4KZX|1|i|G|208
4KZX|1|i|C|209

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8