IL_4KZX_110

3D structure

PDB id

4KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1.

Experimental method

X-RAY DIFFRACTION

Resolution

7.81 Å

Loop

Sequence

GGUGCG*CCGUCC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZX_110 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3198

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4KZX|1|i|G|686
4KZX|1|i|G|687
4KZX|1|i|U|688
4KZX|1|i|G|689
4KZX|1|i|C|690
4KZX|1|i|G|691
*
4KZX|1|i|C|725
4KZX|1|i|C|726
4KZX|1|i|G|727
4KZX|1|i|U|728
4KZX|1|i|C|729
4KZX|1|i|C|730

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4X

Chain J

40S Ribosomal protein S9

Chain W

40S ribosomal protein S15A