IL_4KZX_114

3D structure

PDB id

4KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1.

Experimental method

X-RAY DIFFRACTION

Resolution

7.81 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZX_114 not in the Motif Atlas

Homologous match to IL_8C3A_451

Geometric discrepancy: 0.2075

The information below is about IL_8C3A_451

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_92540.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

32

Unit IDs

4KZX|1|i|G|1231
4KZX|1|i|G|1232
*
4KZX|1|i|C|1516
4KZX|1|i|A|1517
4KZX|1|i|C|1518

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein S15

Chain S

40S ribosomal protein S18